Scaffold AL20A1W_1002459

Overview

Basic Information

• Taxon OID: 3300000880
• Scaffold ID: AL20A1W_1002459
• Source Dataset Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10469
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location

• Location Name: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040820	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
AL20A1W_10024591	F040820	N/A	VLLSLKDGSHRASASVGTDPVAVIVSEDGGMAYVADSSPGDVYAVRLPGLSVAWKRHVGGAPFGLLLHAGSLFVSLFSGAAVVELDPADGTQRASHPVPQGPGVLGIAPDGRVMVAGTRGNVDYVDGTSTPAGHGFSVAVVAGEIWTADYERAELVRAGDGHRVGLPLPLFPFWLAPGAAGTLLIAAEGGTEDTDPGGVFSFDGVGTFKTLARPRDPDQVLQSGSTVLVAAHGDHEVLAIAGGLTDHWGVGSSPVAIASDPALNLLVVAVNANE*